YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	VTE6_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATISSTLLL NSSRSALPLR FPKFSGFSSS SPFARSYRFG RRNLEPLSNG MLSSGSRADG  60
   61 ATAAAASMEG VMTEAMKLIQ SASPTWKSAV ANNLLIFVLG SPLLVTGLSA SGIAAAFLLG 120
  121 TLTWRAYGSA GFLLVAAYFV IGTAATKVKM TQKEAQGVAE KRKGRRGPRS VIGSSAAGCV 180
  181 CAFLSIYQVG GAAFSQLFRL GFVSSFCTKV SDTVSSEIGK AYGKTTYLAT TFKIVPRGTE 240
  241 GAMSLEGTLA GLLASFFLAS VGCFLGQITP PEAAVCVLAS QIANLGESII GASFQDKEGF 300
  301 KWLNNDVVNV INISLGSIVA ILMQQFILQN WVK

Type	Start	End	Confidence
Cytoplasmic	1	93	0.94
Transmembrane Helix	94	118	0.90
Non-Cytoplasmic	119	125	0.77
Transmembrane Helix	126	146	0.90
Cytoplasmic	147	170	0.87
Transmembrane Helix	171	191	0.94
Non-Cytoplasmic	192	246	0.92
Transmembrane Helix	247	266	0.89
Cytoplasmic	267	306	0.55
Transmembrane Helix	307	328	0.79
Non-Cytoplasmic	329	333	0.45