YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157817875, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	79	0.99
Transmembrane Helix	80	102	0.91
Non-Cytoplasmic	103	131	0.94
Transmembrane Helix	132	151	0.94
Cytoplasmic	152	163	0.82
Transmembrane Helix	164	182	0.94
Non-Cytoplasmic	183	190	0.76
Transmembrane Helix	191	212	0.90
Cytoplasmic	213	248	0.93
Transmembrane Helix	249	271	0.85
Non-Cytoplasmic	272	321	0.88
Transmembrane Helix	322	343	0.90
Cytoplasmic	344	374	0.89
Transmembrane Helix	375	399	0.87
Non-Cytoplasmic	400	406	0.82
Transmembrane Helix	407	430	0.89
Cytoplasmic	431	436	0.73
Transmembrane Helix	437	457	0.92
Non-Cytoplasmic	458	464	0.76
Transmembrane Helix	465	485	0.88
Cytoplasmic	486	501	0.73
Transmembrane Helix	502	521	0.88
Non-Cytoplasmic	522	528	0.62
Transmembrane Helix	529	546	0.94
Cytoplasmic	547	630	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKEVPTCWWC PEQQALGLDL VMEVEPPLYP VAGVAGPQGD EDRLGVHDGP EAPLDELVGA  60
   61 YPNYNEEEEE RRYYRRKRLG VVKNVLAAST GGTLTYGVYL GLLQMQLILH YDETYREVKY 120
  121 GNMGLPDIDS KMLMGINVTP IAALLYTPVL IRPKVLMSLP LYRFFGTKWM MFLAVGIYAL 180
  181 FVSTNYWERY YTLVPSAVAL GMAIVPLWAS MGNYITRMSQ KYYEYSHYKE QDEQGPQQRP 240
  241 PRGSHAPYLL VFQAIFYSFF HLSFACAQLP MVYFLNHYLY DLNHTLFNVK SCGTKSYGIL 300
  301 NGFNKTVLRT LPRSRNLIVV ESVLMAVAFL AMLLVLGLCG AAYRPTEEID LRSVGWGNIF 360
  361 QLPFKHVRDF RLRHLVPFFI YSGFEVLFAC TGFTLGYGVC SMGLERLAYL LIAYSLGASA 420
  421 ASVLGLLGLW LPRSVPLVAG AGLHLLLTLS LFFWAPAPRV LQHSWIFYFV AALWGVGSAL 480
  481 NKTGLSTLLG ILYEDKERQD FIFTIYHWWQ AVAIFVVYLG SSLPMKAKLA VLLVTLVAAA 540
  541 TSYLWMENKL QQGLVPRQPR IPKPQHKVRG YRYLEEDNSD ESDVEGEQGQ GDCAEEEAPQ 600
  601 AGPLGAEPAG PCRRPCPYEQ ALGGDGPEEQ