YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25289360, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASIAFVFKV LCVSFLFIFV ASRPTIRPKT FNVQRHGSKP DGKTDNANVF TSIWSRACKR  60
   61 KSGSSKIYVP KGIFYLGGVE FVGPCKNPIE FVIDGTLLAP ANPSDIKQDT WINFRYINNL 120
  121 SISGSGTLDG QGKQSWPLND CHKNLNCPKL AMTMGFAFVN NSNIKDITSL NSKMGHFNFF 180
  181 SVHHFNITGV TITASGDSPN TDGIKMGSCS NMHISNTNIG TGDDCIAILS GTTNLDISNV 240
  241 KCGPGHGISV GSLGKNKDEK DVKNLTVRDV IFNGTSDGIR IKTWESSASK ILVSNFVYEN 300
  301 IQMIDVGKPI NIDQKYCPHP PCEHEQKGES HVQIQDLKLK NIYGTSKNKV AMNLQCSKSF 360
  361 PCKNIELIDI NIKSNGLENS SSIAVCENVD GSMSGKMVPQ HCLN

Type	Start	End	Confidence
Signal Peptide	1	24	0.87
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	404	0.99