YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7459227, gi\|7...
Protein type:	Transmembrane
Type Confidence:	0.87
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKILRVSDW RKITQRNNLT KRDLIIISIT LTHITFLFEN ANNKFHREAE MAKSLLCSST  60
   61 LNPFFSTTLS SSKKNQIAYS GNSKNQTSSS LLWKRRELSL GFMSSLVAIG LVSNDRRRHD 120
  121 ANAAILEADD DEELLEKVKQ DRKKRIERQA VLNSAVKEKG YLQDLVYKLS KVGQAIENND 180
  181 LPAAGLVLGK GIDTEWVKTV NLAFTKLSTS PEENTEVEAF NSSLASLITS GLVLVLVLNF 240
  241 FIHKNQNLNK NDIESSKLAF VSSAGAFEKW TTLTGLLEQL KGL

Type	Start	End	Confidence
Cytoplasmic	1	18	0.62
Transmembrane Helix	19	37	0.54
Non-Cytoplasmic	38	223	0.89
Transmembrane Helix	224	242	0.62
Cytoplasmic	243	283	0.56