YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|9369401
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.41
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTFLKSLIF LQDSCLAFLS LMFHRGSSED AAEALKKLET SINGARISFD TTWTREFRSL  60
   61 FIVPLFKCLV AFCLIISLLV FIEGIYMNLV VLYVKVFERK PEKVYRWEAM QEDIELGHET 120
  121 YPMVLVQIPM YNEKEVLQLS IGAACRLIWP LDRLIVQVLD DSTDQTIKEL VNTECAKWES 180
  181 KGVNIKCERR DNRNGYKAGA LKEGMKHNYV KLCNYVVIFD ADFQPEPDYL QHSVPFLVHN 240
  241 PEVALVQARW RFMNANKCLM TRMQEMSLNY HFMAEQESGS TRHAFFSFNG TAGVWRMAAM 300
  301 EEAGGWHDRT TVEDMDLAVR AGLLGWKFVF LNDLTVKSEL PSKFKAFRFQ QHRWSCGPAN 360
  361 LFRKMIMEII RNKIIVHCFT FIFYCVILPT SVFFPEVNIP AWSTFYIPSM ITLCIVIATP 420
  421 RSFYLVIFWI LFENVMSMHR TKGTFIGILE RQRVNEWVVT EKLGDALKTK LLPRIGKPSN 480
  481 MFLERVNSKE IMVGIYILCC ACYGLFFGNT LLYLYLFMQA VAFLISGVGF VGT

Type	Start	End	Confidence
Signal Peptide	1	28	0.40
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	62	0.83
Transmembrane Helix	63	90	0.75
Cytoplasmic	91	373	0.91
Transmembrane Helix	374	394	0.94
Non-Cytoplasmic	395	408	0.80
Transmembrane Helix	409	432	0.90
Cytoplasmic	433	490	0.97
Transmembrane Helix	491	507	0.90
Non-Cytoplasmic	508	510	0.44
Transmembrane Helix	511	532	0.62
Cytoplasmic	533	533	0.51