YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|12597815
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.33
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.68
Transmembrane Helix	12	29	0.47
Non-Cytoplasmic	30	150	0.55
Transmembrane Helix	151	168	0.33
Cytoplasmic	169	400	0.71
Transmembrane Helix	401	424	0.83
Non-Cytoplasmic	425	428	0.54
Transmembrane Helix	429	451	0.85
Cytoplasmic	452	477	0.67
Transmembrane Helix	478	501	0.63
Non-Cytoplasmic	502	515	0.42
Transmembrane Helix	516	536	0.75
Cytoplasmic	537	543	0.41
Transmembrane Helix	544	567	0.71
Non-Cytoplasmic	568	584	0.70
Transmembrane Helix	585	609	0.77
Cytoplasmic	610	629	0.76
Transmembrane Helix	630	653	0.88
Non-Cytoplasmic	654	668	0.79
Transmembrane Helix	669	695	0.78
Cytoplasmic	696	715	0.79
Transmembrane Helix	716	736	0.86
Non-Cytoplasmic	737	741	0.61
Transmembrane Helix	742	764	0.88
Cytoplasmic	765	772	0.92
Transmembrane Helix	773	795	0.91
Non-Cytoplasmic	796	809	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGEGKMEHRR KVLVTAGCLG SGYLLYKLYN SHTRRLADLE RELAHEREND EIIKTQLSSV  60
   61 LIKTDPLDFS SYGFSNGPVL FVLLFRMKAH FESIQMIVDS TTLPHAMQFL SIRISEEIDV 120
  121 SHVMDRLNQG KGMLSPPEKL QLWDELKILS FTRMVLSLWS VTMLSLYIRV QVNILGRHLY 180
  181 VDTARALGSS HLLEEVDLID RDDEQKFLSS ADFLVTNAMP SLISDMQGSA EEVLKGKQLK 240
  241 DVITTRVLQE TVMQIVDVFM STGSPHHWVD YLMMPQDTKL SRTTSDSSDE AVSKFHQLMV 300
  301 ETREVLISTE FTNIVEISLK CFTDVLVEEM ETQTEAGGLA TGKPLAKVLP QIEKTMNVIT 360
  361 AEPSKNRFLQ IIRDLPEIDE LERQKEIDDW LPITSSRNAK WWYSTFHNVT AMVGAGVLGL 420
  421 PFFMAQLGWG PGIAVLILSW IITLYTLWQM VEMHEMVPGK RFDRYHELGQ FAFGERLGLY 480
  481 IIVPQQIIVE VGVCIVYMVT GGQSLKKFHE IACQDCSPIR LSFFIMIFAS SHFVLSHLPN 540
  541 FNSISGVSLV AAVMSLSYST IAWTATAAKG VQEDVQYGYK SGTTASTVLS FFTGLGGIAF 600
  601 AYAGHNVVLE IQATIPSTPS NPSKGPMWRG VVVAYVVVAL CYFPVALVGY GVFGNAVLDN 660
  661 VLMSLETPVW AIATANLFVV MHVIGSYQIF AMPVFDMVET FLVKKLNFKP STVLRFIVRN 720
  721 VYVALTMFIG IMIPFFGGLL AFFGGFAFAP TSYFLPCIMW LLIYKPKRFS LSWWTNWVCI 780
  781 VLGVVLMILS SIGGLRQIII QSKDYSFFS