YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|67633432, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.99
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSIASTFKA LCLSFLFIAV ASRPTIRPKV FNVRRYGSRP DGKTDNANAF TSVWKRACTR  60
   61 ISGSSKIYVP KGTFYLGGVE FVGPCKNPIE FVIDGTLLAP ANPRDIKQDT WINFRYINNL 120
  121 SISGSGTLDG QGKYSWPLND CHKNTNCPKL AMTMGFAFVN NSRIKDITSL NSKMGHFNFF 180
  181 SVHRFNITGV TITAPGDSPN TDGIKMGSCS NIHISNTNIG TGDDCIAILS GTTNLDISNI 240
  241 KCGPGHGISV GSLGKNKDEK DVKHLTVRDT VFNGTSDGIR IKTWESSASK IVVSNFIYEN 300
  301 IQMIDVGKPI NIDQKYCPHP PCEHEKKGES HVQIQDIKLK NIYGTSNNIV AVNLQCSKSF 360
  361 PCKNVELIDI NLKHTGLEKG HSTAMCENVD GSVRSKMVPQ HCLD

Type	Start	End	Confidence
Signal Peptide	1	22	0.98
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	404	0.99