YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25406242, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGSNGEERV VHEVAMVVPK RVLEEEEGDC VEVLVTELRK KGMVVDRVVG LAHEFLKVAA  60
   61 PSEILGNAAA ELHIRKPTRL GIDLPFEMQG SEAFIRQPDG LLFSWFERFR CYQHLIYGIV 120
  121 NSGGHDVTLK LDGREFCWTA GESLLRRLES EGVIKQMFPL HDELKRKELL QNWALNWWNC 180
  181 TNQPIDQIYS YFGAKELIKN LGNERAKEKE AYQRYEWFAY RKRFRNDVLV IMSIICLQLP 240
  241 FELAYAHIFE IITSDIIKYV LTAIYLLIIQ YLTRLGGKVS VKLINREINE SVEYRANSLI 300
  301 YKVFGLYFMQ TYIGIFYHVL LHRNFMTLRQ VLIQRLIISQ VFWTLMDGSL PYLKYSYRKY 360
  361 RARTKKKMED GSSTGKIQIA SRVEKEYFKP TYSASIGVEL EDGLFDDSLE LALQFGMIMM 420
  421 FACAFPLAFA LAAVSNVMEI RTNALKLLVT LRRPLPRAAA TIGAWLNIWQ FLVVMSICTN 480
  481 SALLVCLYDQ EGKWKIEPGL AAILIMEHVL LLLKFGLSRL VPEEPAWVRA SRVKNVTQAQ 540
  541 DMYCKQLLRS ISGEFNSLTK PEQEQQQDSE RF

Type	Start	End	Confidence
Cytoplasmic	1	227	0.96
Transmembrane Helix	228	249	0.88
Non-Cytoplasmic	250	255	0.88
Transmembrane Helix	256	277	0.83
Cytoplasmic	278	297	0.89
Transmembrane Helix	298	321	0.82
Non-Cytoplasmic	322	412	0.55
Transmembrane Helix	413	437	0.84
Cytoplasmic	438	460	0.47
Transmembrane Helix	461	487	0.75
Non-Cytoplasmic	488	497	0.48
Transmembrane Helix	498	517	0.67
Cytoplasmic	518	572	0.67