YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FAH2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVAERYTVDL NKPLVFQVGH LGEEYQEWIH QPIVCVEGPR FFESDFWEFL TRTVWWAIPT  60
   61 IWLPVVCYVL SISASKGLTF PQIGLIVAFG VLTWTLLEYT LHRFLFHIQT KSYWANTAHY 120
  121 LLHGCHHKHP QDGLRLVFPP TATAILLVPL WKLLHLLATP ATAPAILGGI LFGYVMYDIT 180
  181 HYYLHHGQPK EPTFKHLKKY HLNHHFRIQD KGYGITSSLW DKVFGTLPGI KAAAKKS

Type	Start	End	Confidence
Cytoplasmic	1	52	0.82
Transmembrane Helix	53	72	0.93
Non-Cytoplasmic	73	79	0.60
Transmembrane Helix	80	101	0.86
Cytoplasmic	102	135	0.77
Transmembrane Helix	136	154	0.55
Non-Cytoplasmic	155	155	0.36
Transmembrane Helix	156	180	0.76
Cytoplasmic	181	237	0.65