YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AB14C_ARATH
Protein type:	Transmembrane
Type Confidence:	0.89
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.50
Transmembrane Helix	12	26	0.42
Non-Cytoplasmic	27	44	0.65
Transmembrane Helix	45	63	0.83
Cytoplasmic	64	95	0.89
Transmembrane Helix	96	120	0.91
Non-Cytoplasmic	121	132	0.78
Transmembrane Helix	133	151	0.97
Cytoplasmic	152	164	0.80
Transmembrane Helix	165	186	0.94
Non-Cytoplasmic	187	202	0.79
Transmembrane Helix	203	222	0.81
Cytoplasmic	223	323	0.92
Transmembrane Helix	324	345	0.84
Non-Cytoplasmic	346	361	0.86
Transmembrane Helix	362	385	0.82
Cytoplasmic	386	439	0.94
Transmembrane Helix	440	458	0.92
Non-Cytoplasmic	459	464	0.69
Transmembrane Helix	465	483	0.94
Cytoplasmic	484	540	0.92
Transmembrane Helix	541	562	0.82
Non-Cytoplasmic	563	566	0.52
Transmembrane Helix	567	589	0.53
Cytoplasmic	590	973	0.84
Transmembrane Helix	974	994	0.93
Non-Cytoplasmic	995	1017	0.80
Transmembrane Helix	1018	1040	0.91
Cytoplasmic	1041	1087	0.79
Transmembrane Helix	1088	1109	0.88
Non-Cytoplasmic	1110	1113	0.68
Transmembrane Helix	1114	1135	0.84
Cytoplasmic	1136	1207	0.78
Transmembrane Helix	1208	1229	0.87
Non-Cytoplasmic	1230	1235	0.72
Transmembrane Helix	1236	1257	0.86
Cytoplasmic	1258	1539	0.74

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRWLSSTWLS DLSCSSSSVI EPSSSLPAPI QWLRFILLSP CPQRLLSSTV DVLFLLILFF  60
   61 FAIQKLCSSS SSRTNGEADI TKPLLGRRTR TRTTGLFKTT VVVTIVLSFC SLVLCVSAFF 120
  121 TTRTKLKLVD TLFWLIHAVT NVVIAVLVLH LKRFASPSHP LTLRIYWVFN FVVTTLFTVS 180
  181 GILHLLSDDP AAASLRADDV ASFISFPLTA VLLLVSIKGS TGVVVTTSNV TAPAKSNDVV 240
  241 VEKSENVSLY ASASFISKTF WLWMNPLLRK GYKSPLNLDQ VPTLSPEHRA EKLATLFESK 300
  301 WPKPQENSRN PVRTTLIRCF WKEIAFTAVL AIIRLSVIYV GPVLIQSFVD FTSGKRSSPS 360
  361 QGYYLVLILL IAKFVEVLST HQFNFNSQKL GMLIRSTLIT ALYKKGLKLT GSARQNHGVG 420
  421 QIVNYMAVDA QQLSDMMLQL HAIWLMPLQV AAAIVLLYNT LGPSVVTTVI GLTGIFVFIL 480
  481 LGTKRNNRYQ FSLMMNRDSR MKATNEMLNY MRVIKFQAWE DHFNERILKF REMEFGWLSK 540
  541 FLYSIAGNII VLWSTPVLIS ALTFTTAVFL GVKLDAGTVF TTTTIFKILQ EPIRTFPQSM 600
  601 ISLSQAMISL GRLDAYMMSR ELSEETVERS QGCDGNVAVE IKDGSFSWDD EDDEPAIENI 660
  661 NFEVKKGELA AIVGTVGSGK SSLLASVLGE MHKLSGKVRV CGTTAYVAQT SWIQNGTVQD 720
  721 NILFGLPMNR SKYNEVLKVC CLEKDMQIME FGDQTEIGER GINLSGGQKQ RIQLARAVYQ 780
  781 ESDVYLLDDV FSAVDAHTGS DIFKKCVRGA LKGKTILLVT HQVDFLHNVD RILVMRDGMI 840
  841 VQSGKYDELV SSGLDFGELV AAHETSMELV EAGSASATAA NVPMASPITQ RSISIESPRQ 900
  901 PKSPKVHRTT SMESPRVLRT TSMESPRLSE LNDESIKSFL GSNIPEDGSR LIKEEEREVG 960
  961 QVSFQVYKLY STEAYGWWGM ILVVFFSVAW QASLMASDYW LAYETSAKNE VSFDATVFIR1020
 1021 VYVIIAAVSI VLVCLRAFYV THLGLKTAQI FFKQILNSLV HAPMSFFDTT PSGRILSRAS1080
 1081 TDQTNVDIFI PFMIGLVATM YTTLLSIFIV TCQYAWPTVF FIIPLGWLNI WYRGYYLASS1140
 1141 RELTRLDSIT KAPVIHHFSE SIAGVMTIRA FKKQPMFRQE NVKRVNANLR MDFHNNGSNE1200
 1201 WLGFRLELIG SWVLCISALF MVMLPSNIIK PENVGLSLSY GLSLNGVLFW AIYLSCFIEN1260
 1261 KMVSVERIKQ FTDIPAEAKW EIKESRPPPN WPYKGNIRLE DVKVRYRPNT PLVLKGLTID1320
 1321 IKGGEKIGVV GRTGSGKSTL IQVLFRLVEP SGGKIIIDGI DICTLGLHDL RSRFGIIPQE1380
 1381 PVLFEGTVRS NIDPTEKYSD EEIWKSLERC QLKDVVASKP EKLDSLVADN GENWSVGQRQ1440
 1441 LLCLGRVMLK RSRILFLDEA TASVDSQTDA MIQKIIREDF SDCTIISIAH RIPTVMDCDR1500
 1501 VLVIDAGKAK EYDSPVRLLE RQSLFAALVQ EYALRSAGI