YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|12321533, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.90
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSIASTFKA LCLSFLFIVV ASRPTIRPKV FNVRRYGSRP DGKTDNANAF TSVWKHACTR  60
   61 ISGSSKIYVP KGTFYLGGVE FVGPCKNPIE FVIDGTLLAP ANPRDIKQDT WINFRYINNL 120
  121 SISGSGTLDG QGKYSWPLND CHKNTNCPKL AMTMGFAFVN NSRIKDITSL NSKMGHFNFF 180
  181 SVHRFNITGV TITAPGDSPN TDGIKMGSCS NIHISNTNIG TGDDCIAILS GTTNLDISNV 240
  241 KCGPGHGISV GSLGKNKDEK DVKHLTVRDT VFNGTSDGIR IKTWESSASK LVVSNFIYEN 300
  301 IQMIDVGKPI NIDQKYCPHP PCEHEKKGKS HVQIQDIKLK NIYGTSNNIV AVNLQCSKSF 360
  361 PCKNVELIDI NLKHTGLEKG HSTAMCENVD GSVRGKNGSS TLSRLTQWSI EKITFWVIHD 420
  421 IFSYILLPNF CIYFMFYVLV YMIS

Type	Start	End	Confidence
Signal Peptide	1	24	0.94
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	415	0.99
Transmembrane Helix	416	441	0.77
Cytoplasmic	442	444	0.77