YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|9294547
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADIDIGTAA TTGGNEGRGG TRERLINREN KFTRSVSHAQ DELHSFRKYL RWMCVDQSSP  60
   61 WTAVLSWSMF VVFTLVVPAT SHFMLACSDC DSHHSRPFVS KYGLRRFLFF DKLWDESETV 120
  121 RLGYTNQLNR SLKILSYFVS PCFLAMSSYK IWWYASGASQ IPFLGNVILS DTVACLMELC 180
  181 SWLYRTTVIF LVCVLFRLIC HLQILRLQDF AQVFQMDSDV GSILSEHLRI RRHLRIISHR 240
  241 YRTFILLSLI LVTGSQFYSL LITTKAYAEL NIYRAGELAL CSMTLVTALL ILLRSASKIT 300
  301 HKAQAVTCLA AKWHVCATIE SFETVDGETP RLVDRASGHG YYPTDDDNGE SDSEDYGDEE 360
  361 DDFDNNNLIP AYAYSTISFQ KRQALVNYFE NNRSGITVFG FTLDRSTLHT IFGIEMSLVL 420
  421 WLLGKTIGIS

Type	Start	End	Confidence
Non-Cytoplasmic	1	62	0.58
Transmembrane Helix	63	86	0.66
Cytoplasmic	87	133	0.77
Transmembrane Helix	134	153	0.79
Non-Cytoplasmic	154	181	0.65
Transmembrane Helix	182	200	0.83
Cytoplasmic	201	240	0.91
Transmembrane Helix	241	262	0.91
Non-Cytoplasmic	263	271	0.87
Transmembrane Helix	272	293	0.91
Cytoplasmic	294	407	0.96
Transmembrane Helix	408	429	0.52
Non-Cytoplasmic	430	430	0.60