YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DTX48_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	69	0.97
Transmembrane Helix	70	90	0.80
Non-Cytoplasmic	91	99	0.62
Transmembrane Helix	100	120	0.79
Cytoplasmic	121	137	0.73
Transmembrane Helix	138	159	0.89
Non-Cytoplasmic	160	176	0.87
Transmembrane Helix	177	198	0.86
Cytoplasmic	199	208	0.73
Transmembrane Helix	209	230	0.87
Non-Cytoplasmic	231	237	0.82
Transmembrane Helix	238	261	0.91
Cytoplasmic	262	279	0.85
Transmembrane Helix	280	301	0.93
Non-Cytoplasmic	302	321	0.83
Transmembrane Helix	322	342	0.89
Cytoplasmic	343	361	0.86
Transmembrane Helix	362	383	0.94
Non-Cytoplasmic	384	396	0.85
Transmembrane Helix	397	416	0.82
Cytoplasmic	417	434	0.72
Transmembrane Helix	435	457	0.89
Non-Cytoplasmic	458	463	0.82
Transmembrane Helix	464	484	0.95
Cytoplasmic	485	532	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCNSKPSSAS SSLLSCKDKT HISKLETCDT DNPHYSEFRD TDSLDLKRWP SFLEGLEEVK  60
   61 AIGKISGPTA MTGLLMYSRA MISMLFLGYL GELELAGGSL SIGFANITGY SVISGLSMGM 120
  121 EPICGQAYGA KQMKLLGLTL QRTVLLLLSC SVPISFSWLN MRRILLWCGQ DEEISSVAQQ 180
  181 FLLFAIPDLF LLSLLHPLRI YLRTQNITLP VTYSTAVSVL LHVPLNYLLV VKLEMGVAGV 240
  241 AIAMVLTNLN LVVLLSSFVY FTSVHSDTWV PITIDSLKGW SALLSLAIPT CVSVCLEWWW 300
  301 YEFMIILCGL LANPRATVAS MGILIQTTAL VYVFPSSLSL GVSTRISNEL GAKRPAKARV 360
  361 SMIISLFCAI ALGLMAMVFA VLVRHHWGRL FTTDAEILQL TSIALPIVGL CELGNCPQTT 420
  421 GCGVLRGCAR PTLGANINLG SFYFVGMPVA ILFGFVFKQG FPGLWFGLLA AQATCASLML 480
  481 CALLRTDWKV QAERAEELTS QTPGKSPPLL PIASSKSRST SGTEDMMRTM LV