YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GT14B_ARATH
Protein type:	Transmembrane
Type Confidence:	0.64
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKLKSYYMQ VRNQQQSLDR KWILPLAIGS ICSLFLLLLT NLASSSGQTR LIPFSVYGFR  60
   61 SSVFVESKIN PVSVSLTVSV SPPPPPRLAY LISGSSGDGQ MLKRTLMALY HPNNQYVVHL 120
  121 DRESSPEERL DLSGFVANHT LFQRFQNVRM IVKANFVTYR GPTMVANTLH AAAILLREGG 180
  181 DWDWFINLSA SDYPLVTQDD LLHTFSYLPR DLNFIDHTSN IGWKESHRAK PIIIDPGLYM 240
  241 SKKADVFWVS QKRSMPTAFK LFTGSAWMML SRPFVDYFIW GWDNLPRIVL MYYANFLSSP 300
  301 EGYFHTVICN AREFTNTTVN SDLHFISWDN PPKQHPHHLT LDDFQRMVDS NAPFARKFRR 360
  361 DEPVLDKIDS ELLFRSHGMV TPGGWCIGTR ENGSDPCAVI GDTSVIKPGL GAKRIEKLIT 420
  421 YLLSTENFRP RQCR

Type	Start	End	Confidence
Cytoplasmic	1	20	0.63
Transmembrane Helix	21	43	0.60
Non-Cytoplasmic	44	434	0.98