YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GPAT7_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESSTTTSYS VVSELEGTLL KNPKPFAYFM LVAFEASGLI RFATLLFLWP IIALLDVLGY  60
   61 RNGSLKLMIF VATAGLHESE IESVARAVLP KFFMDDISMD AWRAFGSCDK RVVVTRMPRV 120
  121 MVERFAKDHL SADEVIGTEI VVNRFGYATG LIQETNVDQS VFNSVANLFV DRRPQLGLGR 180
  181 HIISDSPTFL SLCEEQVHAP VPSNYNGHNQ RLHVQPLPVI FHDGRLVKLP TPATALIILL 240
  241 WIPFGIILAM IRIFVGFLLP LWAIPYVSRI FNTRFIVKGK PPAQATTGNP GVLFVCTHRT 300
  301 LMDPVVLSYV LGRSIPAVTY SISRLSEILS PIPTFRLTRI RDVDAEMIKK ELSNGDLVVY 360
  361 PEGTTCREPF LLRFSALFAE LTDNIVPVAM NYRVGFFHAT TARGWKGLDP IFFFMNPRPV 420
  421 YEVTFLNQLE VEATCSSGKS PYDVANYVQR ILAATLGFEC TNFTRKDKYR VLAGNDGTVS 480
  481 YLSFLDQVKK VVTTFKPFLH

Type	Start	End	Confidence
Non-Cytoplasmic	1	37	0.73
Transmembrane Helix	38	60	0.82
Cytoplasmic	61	234	0.90
Transmembrane Helix	235	264	0.80
Non-Cytoplasmic	265	500	0.77