YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25405693, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIGKTEINF MRLLSAAPNQ QNQSKLMHYV ATLREQLEQL SEEKTLEGLP RVTNAKVNEY  60
   61 YEKIEAVVSR IVAQVPHTEV SDEAFAKDST NDSSPKVEDD TRTPNSPQLR RRIVPASSKE 120
  121 QSYDADPSKP IKLDTAAQAQ VNKQRKLQED LTDEMVVLAR QLKERSQMIS QSVQNTEKIL 180
  181 DSTEEAIEQS LASTGHATVR ATKIYSESSK TSCFQWLLIL AMTCVFIMVV MLIRVT

Type	Start	End	Confidence
Non-Cytoplasmic	1	212	0.53
Transmembrane Helix	213	235	0.89
Cytoplasmic	236	236	0.52