YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7262670, gi\|2...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFVISDEFL GTFVPILVYW VYSGMYICLG SLDKYRLHSK IDEDEKNLVS KSAVVKGVLL  60
   61 QQTLQAIISV ILFKITGSDA DAATTQQFSI LLLARQFIIA MLVIDTWQYF IHRYMHLNKF 120
  121 LYKHIHSQHH RLIVPYSYGA LYNHPLEGLL LDTIGGALSF LFSGMSPRTA IFFFSFATIK 180
  181 TVDDHCGLWL PGNPFHIFFS NNSAYHDVHH QLYGTKYNFS QPFFVMWDRI LGTYLPYSLE 240
  241 KRANGGFETR PIKVSKDE

Type	Start	End	Confidence
Non-Cytoplasmic	1	8	0.76
Transmembrane Helix	9	30	0.80
Cytoplasmic	31	90	0.67
Transmembrane Helix	91	111	0.83
Non-Cytoplasmic	112	147	0.63
Transmembrane Helix	148	171	0.64
Cytoplasmic	172	258	0.79