YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|8978349
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTCFSSATPH RHHLLLSSPS TSKSLLRFPS SYLKPSPSLL FHGSSRSLLS CSDGSNNRPP  60
   61 PSDYLFGGYC FSNFCIIEGS ETVQDFVQMQ LQEIQDNIRS RRNKIFLLME EVRRLRVQQR 120
  121 IKSVKAINED SELEATEMPE ITSSIPFLPN VTPKTLKQLY STSVALISGI IFFGGLIAPN 180
  181 LELKVGLGGT SYEDFIRSLH LPLQLSQVDP IVASFSGGAV GVISTLMLIE VNNVKQQEKK 240
  241 RCKYCLGTGY LPCARCSASG VCLSIDPITR PRATNQLMQV ATTKRCLNCS GAGKVMCPTC 300
  301 LCTGMVTASE HDPRFDPFD

Type	Start	End	Confidence
Cytoplasmic	1	158	0.94
Transmembrane Helix	159	179	0.87
Non-Cytoplasmic	180	210	0.91
Transmembrane Helix	211	231	0.90
Cytoplasmic	232	319	0.87