YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DTX29_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	63	0.87
Transmembrane Helix	64	85	0.69
Non-Cytoplasmic	86	91	0.72
Transmembrane Helix	92	112	0.85
Cytoplasmic	113	130	0.76
Transmembrane Helix	131	153	0.90
Non-Cytoplasmic	154	158	0.76
Transmembrane Helix	159	183	0.84
Cytoplasmic	184	194	0.88
Transmembrane Helix	195	217	0.92
Non-Cytoplasmic	218	234	0.68
Transmembrane Helix	235	258	0.66
Cytoplasmic	259	268	0.72
Transmembrane Helix	269	294	0.83
Non-Cytoplasmic	295	303	0.70
Transmembrane Helix	304	328	0.86
Cytoplasmic	329	345	0.80
Transmembrane Helix	346	368	0.95
Non-Cytoplasmic	369	417	0.63
Transmembrane Helix	418	440	0.83
Cytoplasmic	441	446	0.46
Transmembrane Helix	447	470	0.86
Non-Cytoplasmic	471	500	0.55

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKDKDITET LLTAAEERSD LPFLSVDDIP PITTVGGFVR EFNVETKKLW YLAGPAIFTS  60
   61 VNQYSLGAIT QVFAGHISTI ALAAVSVENS VVAGFSFGIM LGMGSALETL CGQAFGAGKL 120
  121 SMLGVYLQRS WVILNVTALI LSLLYIFAAP ILASIGQTAA ISSAAGIFSI YMIPQIFAYA 180
  181 INFPTAKFLQ SQSKIMVMAV ISAVALVIHV PLTWFVIVKL QWGMPGLAVV LNASWCFIDM 240
  241 AQLVYIFSGT CGEAWSGFSW EAFHNLWSFV RLSLASAVML CLEVWYFMAI ILFAGYLKNA 300
  301 EISVAALSIC MNILGWTAMI AIGMNTAVSV RVSNELGANH PRTAKFSLLV AVITSTLIGF 360
  361 IVSMILLIFR DQYPSLFVKD EKVIILVKEL TPILALSIVI NNVQPVLSGV AVGAGWQAVV 420
  421 AYVNIACYYV FGIPFGLLLG YKLNYGVMGI WCGMLTGTVV QTIVLTWMIC KTNWDTEASM 480
  481 AEDRIREWGG EVSEIKQLIN