YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Y3565_ARATH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.94
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNNWKSVRL RLQNRTLVFL LVILSFGSCY SLKSQGDGFL ESVTKDLWSD IDAEDLRAVG  60
   61 FHRKLLGRFR NPYTHLNAFR DRPVARATPP SSSVSTRPDA KRSSTLPPPQ KSPPAQHVSA 120
  121 PPPFVHHVTL PSLTSSSKTS SNSTIPIVAG CIAGAVFILL LATGVFFFKS KAGKSVNPWR 180
  181 TGLSGQLQKV FITGVPKLKR SEIEAACEDF SNVIGSCPIG TLFKGTLSSG VEIAVASVAT 240
  241 ASAKEWTNNI EMQFRKKIEM LSKINHKNFV NLLGYCEEEE PFTRILVFEY ASNGTVFEHL 300
  301 HYKESEHLDW VMRLRIAMGI AYCLDHMHGL KPPIVHSNLL SSSVQLTEDY AVKIADFNFG 360
  361 YLKGPSETES STNALIDTNI SETTQEDNVH SFGLLLFELM TGKLPESVQK GDSIDTGLAV 420
  421 FLRGKTLREM VDPTIESFDE KIENIGEVIK SCIRADAKQR PIMKEVTGRL REITGLSPDD 480
  481 TIPKLSPLWW AELEVLSTA

Type	Start	End	Confidence
Signal Peptide	1	31	0.99
N-region	1	22
H-region	23	28
C-region	29	31
Cleavage Site	31	32
Non-Cytoplasmic	32	144	0.99
Transmembrane Helix	145	168	0.88
Cytoplasmic	169	499	0.81