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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: SBT18_ARATH
Protein type: Globular with Signal Peptide
Type Confidence: 0.98
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSSSSSSS ITIITTFLFL LLHTTAKKTY IIRVNHSDKP ESFLTHHDWY TSQLNSESSL  60
   61 LYTYTTSFHG FSAYLDSTEA DSLLSSSNSI LDIFEDPLYT LHTTRTPEFL GLNSEFGVHD 120
  121 LGSSSNGVII GVLDTGVWPE SRSFDDTDMP EIPSKWKGEC ESGSDFDSKL CNKKLIGARS 180
  181 FSKGFQMASG GGFSSKRESV SPRDVDGHGT HTSTTAAGSA VRNASFLGYA AGTARGMATR 240
  241 ARVATYKVCW STGCFGSDIL AAMDRAILDG VDVLSLSLGG GSAPYYRDTI AIGAFSAMER 300
  301 GVFVSCSAGN SGPTRASVAN VAPWVMTVGA GTLDRDFPAF ANLGNGKRLT GVSLYSGVGM 360
  361 GTKPLELVYN KGNSSSSNLC LPGSLDSSIV RGKIVVCDRG VNARVEKGAV VRDAGGLGMI 420
  421 MANTAASGEE LVADSHLLPA IAVGKKTGDL LREYVKSDSK PTALLVFKGT VLDVKPSPVV 480
  481 AAFSSRGPNT VTPEILKPDV IGPGVNILAG WSDAIGPTGL DKDSRRTQFN IMSGTSMSCP 540
  541 HISGLAGLLK AAHPEWSPSA IKSALMTTAY VLDNTNAPLH DAADNSLSNP YAHGSGHVDP 600
  601 QKALSPGLVY DISTEEYIRF LCSLDYTVDH IVAIVKRPSV NCSKKFSDPG QLNYPSFSVL 660
  661 FGGKRVVRYT REVTNVGAAS SVYKVTVNGA PSVGISVKPS KLSFKSVGEK KRYTVTFVSK 720
  721 KGVSMTNKAE FGSITWSNPQ HEVRSPVAFS WNRF

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle