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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: CHUP1_ARATH
Protein type: Globular with Signal Peptide
Type Confidence: 0.78
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFVRIGFVVA ASIAAVTVKR LNVKPSKPSK PSDNGEGGDK EQSVDPDYNL NDKNLQEEEE  60
   61 EEEEEVKLIN SVINQTRGSF SDYLDDDILP EFEDLLSGEI EYPLPDDDNN LEKAEKERKY 120
  121 EVEMAYNDGE LERLKQLVKE LEEREVKLEG ELLEYYGLKE QESDIVELQR QLKIKTVEID 180
  181 MLNITINSLQ AERKKLQEEL SQNGIVRKEL EVARNKIKEL QRQIQLDANQ TKGQLLLLKQ 240
  241 HVSSLQMKEE EAMNKDTEVE RKLKAVQDLE VQVMELKRKN RELQHEKREL SIKLDSAEAR 300
  301 IATLSNMTES DKVAKVREEV NNLKHNNEDL LKQVEGLQMN RFSEVEELVY LRWVNACLRY 360
  361 ELRNYQTPAG KISARDLSKN LSPKSQAKAK RLMLEYAGSE RGQGDTDLES NYSQPSSPGS 420
  421 DDFDNASMDS STSRFSSFSK KPGLIQKLKK WGKSKDDSSV QSSPSRSFYG GSPGRLSSSM 480
  481 NKQRGPLESL MIRNAGESVA ITTFGQVDQE SPGTPETPNL PRIRTQQQAS SPGEGLNSVA 540
  541 ASFHVMSKSV DNVLDEKYPA YKDRHKLAVE REKHIKHKAD QARAERFGGN VALPPKLAQL 600
  601 KEKRVVVPSV ITATGDQSNE SNESNEGKAS ENAATVTKMK LVDIEKRPPR VPRPPPRSAG 660
  661 GGKSTNLPSA RPPLPGGGPP PPPPPPGGGP PPPPGGGPPP PPPPPGALGR GAGGGNKVHR 720
  721 APELVEFYQS LMKRESKKEG APSLISSGTG NSSAARNNMI GEIENRSTFL LAVKADVETQ 780
  781 GDFVQSLATE VRASSFTDIE DLLAFVSWLD EELSFLVDER AVLKHFDWPE GKADALREAA 840
  841 FEYQDLMKLE KQVTSFVDDP NLSCEPALKK MYKLLEKVEQ SVYALLRTRD MAISRYKEFG 900
  901 IPVDWLSDTG VVGKIKLSSV QLAKKYMKRV AYELDSVSGS DKDPNREFLL LQGVRFAFRV 960
  961 HQFAGGFDAE SMKAFEELRS RAKTESGDNN NNNNNNSNEE ESVN

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle