YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7487326, gi\|5...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTVLMATTP PIRCLHASIP TVFRSPAIYQ VSCRSSQLFS YRSTTMMSMC FLRRSDLRSR  60
   61 FLSTPKTTSP MRRPRFSVGA STEESSIPSN RNLIVANSVV IVALAVANRV LYKLALVPMK 120
  121 QYPFFMAQLT TFGYVLIYFT ILYTRRRLGI VTNEMMDVPK WRFAIIGFLE ALGVATGMAA 180
  181 AGRRFLLNQI AGCLLVAVGV VVAVSSGSGA DTTLSGIGFL WPAVLVASAA FQAGASIIKE 240
  241 FVFNDAAKRL EGKSLDIFVV NSFGSGFQAL FVFLLLPFLS NLKGIPFASL PSYLKDGAGC 300
  301 FFNTGAKISG CDGAPILPLL YISTNLAFNI SLLHLVKISS AIVSSLTMML SGPYFYPSMQ 360
  361 RLLSVTKYSN PYEIILLVLL

Type	Start	End	Confidence
Cytoplasmic	1	92	0.59
Transmembrane Helix	93	112	0.83
Non-Cytoplasmic	113	121	0.39
Transmembrane Helix	122	144	0.87
Cytoplasmic	145	185	0.33
Transmembrane Helix	186	210	0.78
Non-Cytoplasmic	211	216	0.60
Transmembrane Helix	217	238	0.89
Cytoplasmic	239	256	0.66
Transmembrane Helix	257	279	0.88
Non-Cytoplasmic	280	332	0.60
Transmembrane Helix	333	356	0.76
Cytoplasmic	357	380	0.63