YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7340692, gi\|1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.33
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	164	0.77
Transmembrane Helix	165	184	0.55
Non-Cytoplasmic	185	188	0.50
Transmembrane Helix	189	208	0.93
Cytoplasmic	209	229	0.48
Transmembrane Helix	230	248	0.33
Non-Cytoplasmic	249	267	0.66
Transmembrane Helix	268	291	0.72
Cytoplasmic	292	298	0.74
Transmembrane Helix	299	320	0.94
Non-Cytoplasmic	321	337	0.80
Transmembrane Helix	338	359	0.85
Cytoplasmic	360	369	0.84
Transmembrane Helix	370	394	0.90
Non-Cytoplasmic	395	414	0.92
Transmembrane Helix	415	436	0.87
Cytoplasmic	437	454	0.87
Transmembrane Helix	455	477	0.89
Non-Cytoplasmic	478	481	0.64
Transmembrane Helix	482	503	0.91
Cytoplasmic	504	511	0.91
Transmembrane Helix	512	534	0.94
Non-Cytoplasmic	535	543	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLDEEFLHD RDHSFLTDDE ENQAALACSD DEHDGDDDGR RGGENSDSSS PLSRDRSDNN  60
   61 LSDVSNPPWP QSYRQSMDLL TGMTPPSVSF MPQSSSRRLA SSFQKKQQSS FCDSLSSSSS 120
  121 KPLLSQPVPD KEETILPVNP QSQLKLSVTD LPLPEPNLCS FSQSVLNGTN VLCGLGLITM 180
  181 PYAIKESGWL GLPILLFFGV ITCYTGVLMK RCLESSPGIQ TYPDIGQAAF GITDSSIRGV 240
  241 VPCVEYIIMM SDNLSGLFPN VSLSIASGIS LDSPQIFAIL TTLLVLPTVW LKDLSLLSYL 300
  301 SVGGVLASIL LGICLFWVGA VDGIGFHATG RVFDLSNLPV TIGIFGFGYS GHSVFPNIYS 360
  361 SMKDPSRFPL VLVICFSFCT VLYIAVAVCG YTMFGEAVES QFTLNMPKHF FPSKVAVWTA 420
  421 VITPMTKYAL TITPIVMSLE ELIPTAKMRS RGVSILFRTM LVTSTLVVAL SVPFFAIVAA 480
  481 LIGSFLAMLV ALIFPCLCYL SILKGKLSNT QIGLCIFIIV FGVVSGCCGT YSAISRLANQ 540
  541 MTD