YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7523402, gi\|1...
Protein type:	Transmembrane
Type Confidence:	0.81
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLSKVTLDI FTKLEQKWLS HCDSSRKTRI LSIDGGGTTG IVAAASILHL EHQIRLQTGD  60
   61 PHAHISDFFD IVAGTGIGGI LAALLVADDG SGRPMFTARD AVKFVAEKNS ELFEIRYTGV 120
  121 FRRNKRYSGK SMERVLETAF RREDGKVLTM KDTCKPLLVP CYDLKTSAPF VFSRAGASES 180
  181 PSFDFELWKV CRATSATPSL FKPFSVVSVD GKTSCSAVDG GLVMNNPTAA AVTHVLHNKR 240
  241 DFPSVNGVDD LLVLSLGNGP STMSSSPGRK LRRNGDYSTS SVVDIVVDGV SDTVDQMLGN 300
  301 AFCWNRTDYV RIQANGLTSG GAEELLKERG VETAPFGVKR ILTESNGERI EGFVQRLVAS 360
  361 GKSSLPPSPC KESAVNPLAD GR

Type	Start	End	Confidence
Cytoplasmic	1	29	0.77
Transmembrane Helix	30	50	0.69
Non-Cytoplasmic	51	67	0.85
Transmembrane Helix	68	87	0.64
Cytoplasmic	88	382	0.60