YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7529740, gi\|1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEEGFIGIG ESEEEAAEIG AFSYSHHQIS DLRRRSSAVK DDSAQTSTPS SPPPPLPIHA  60
   61 GGSAVGATGK AKKKTGGARL WMRFDRTGAM EVVECDKSTI IKRASVPARD LRILGPVFSH 120
  121 SSNILGKNFD LLIPGLAREK AIVVNLEVIK AIVTAEEVLL LDPLRPEVLP FVERLKQQFP 180
  181 QRNGNENALQ ASANVQSPLD PEAAEGLQSE LPFEFQVLEI ALEVVCSFVD KSVAALETEA 240
  241 WPVLDELTKN VSTENLEYVR SLKSNLTRLL ARVQKVRDEL EHLLDDNEDM ADLYLTRKWI 300
  301 QNQQTEAILA GTASNSIALP AHNTSNLHRL TSNRSASMVT SNTEEDDVED LEMLLEAYFM 360
  361 QLDGMRNKIL TVREYIDDTE DYVNIQLDNQ RNELIQLQLT LTIASFAIAA ETLLASLFGM 420
  421 NIPCPLYSIH GVFGYFVWSV TALCIVLFMV TLGYARWKKL LGS

Type	Start	End	Confidence
Cytoplasmic	1	398	0.64
Transmembrane Helix	399	420	0.87
Non-Cytoplasmic	421	431	0.60
Transmembrane Helix	432	455	0.89
Cytoplasmic	456	463	0.67