YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|6723395, gi\|1...
Protein type:	Transmembrane
Type Confidence:	0.86
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYPTGQQTTP LNVQDPTRMM NLDQSSPVAR NETQNGGGIA HAEFAMFNSK RLESDLEAMG  60
   61 NKIKQHEDNL KFLKSQKNKM DEAIVDLQVH MSKLNSSPTP RSENSDNSLQ GEDINAQILR 120
  121 HENSAAGVLS LVETLHGAQA SQLMLTKGVV GVVAKLGKVN DENLSQNYES VTALEAYDNH 180
  181 GNIDINAGLH CLGSSIGREI GDSFDAICLE NLRPYVGQHI ADDLQRRLDL LKPKLPNGEC 240
  241 PPGFLGFAVN MIQIDPAYLL CVTSYGYGLR ETLFYNLFSR LQVYKTRADM ISALPCISDG 300
  301 AVSLDGGIIR KTGIFNLGNR DEVNVRFAKP TASRTMDNYS EAEKKMKELK WKKEKTLEDI 360
  361 KREQVLREHA VFNFGKKKEE FVRCLAQSSC TNQVLKLVFM YLLTLLFYHS ICLLKHIMKL 420
  421 SI

Type	Start	End	Confidence
Non-Cytoplasmic	1	396	0.97
Transmembrane Helix	397	417	0.79
Cytoplasmic	418	422	0.76