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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: lat-2
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.97
Topology Confidence: 0.54
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKQLKYPFL IFIISLAQCQ VSNQNVNLCQ SNICQNGGTC LVASSVPATA TCPKNSIYYM  60
   61 GSCYVFDTTL RNWNDAALYC NNMNSATLPL VESAEDQAFF AGYLQAMIPS NPPADMRPPP 120
  121 DGIWTAVRGV NNVTRASWVY YPGSFLVTDT FWAPQEPNIY VNYNDVCVAL QSDSFYREWT 180
  181 TALCTILKYT VCKVAPTQIQ AKYVAQCSCP NGYGGQTCET QSTTNQQAST QRTCGSNDFQ 240
  241 FSCPNDQTIT VDFASFGAQE SSMCNQASQS REQTCSNVNS LQTVINACQG LQSCEIRNLT 300
  301 STFSNTPCPV PQEQYLETRM RCETAQQPSC LSGLIQFDSR CYSMTIETNE KKQRTMEDAQ 360
  361 TYCSQSGGSI ITSPPDALLQ QIVQKVNAET KKTVNFWIGT PNNCQLLMVT GSSTSYSQCP 420
  421 SSPSSTANVI CSTVPQSTAS VSARPTQSAP VDPVSQTMAR REVYTGVQPP SVPDSINKPR 480
  481 YCKKEKKDGI TYEQTRACML HEQPCPDPQN VEGTVTRYCN CQTAKWETPD TTNCTHRWVA 540
  541 EMETAIKDNQ PVEDISSTVN RQLKSTIERT LFGGDITGTV RLSNDMLSLA RNQFSVLNDR 600
  601 NLRENKARNF TENLGGSGDQ LLSPVAATVW DQLSSTIRIQ HASKLMSVLE QSVLLLGDYM 660
  661 TDQKLNLQYI NWAMEVERSE PEVQTFGAAA SPNVQDDMGM MRVMAAAPPA PQPETNTTIM 720
  721 FPSLKLSPTI TLPSASLLSS LASPTPVAGG GPSILSSFQD DTPVGMASTP NLNRNPVKLG 780
  781 YYAFAGFGQL LNNNNDHTLI NSQVIGASIQ NATQSVTLPV DHPVTFTFQH LTTKGVSNPR 840
  841 CVYWDLMESK WSTLGCTLIA TSSNSSQCSC THLTSFAILM DISGQVGRLS GGLASALDVV 900
  901 STIGCAISIV CLALSVCVFT FFRNLQNVRN SIHRNLCLCL LIAELVFVIG MDRTGNRTGC 960
  961 GVVAILLHYF FLSSFCWMLL EGYQLYMMLI QVFEPNRTRI FLYYLFCYGT PAVVVAISAG1020
 1021 IKWEDYGTDS YCWIDTSTPT IWAFVAPIIV IIAANIIFLL IALKVVLSVQ SRDRTKWGRI1080
 1081 IGWLKGSATL LCLLGITWIF GFLTAVKGGT GTAFAWIFTI LNCTQGIFIF VLHVVLNEKV1140
 1141 RASIVRWLRT GICCLPETSS AAYNSRSFLS SRQRILNMIK VNGHSYPSTA STDDKEKQLT1200
 1201 PITKTTDWLS RLPNQDSVSI PESNFNNLNG TLENSNLNSA EIKEEDEIPE LRRRVTVDLN1260
 1261 PMIVSNNEIE RMSHASSDPR GSQIIEVTAV EKKAPVKRIK FPLGAKQSER GSQHRTKAKV1320
 1321 IAPPESPVSE SGSKDYRF

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle