YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ser-2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSLEMVLRA IDSIRDSVIN ASSAVSTTTL PPLDIPMTSM KPPSIIPTVE LVLGTITYLV  60
   61 IIAMTVVGNT LVVVAVFSYR PLKKVQNYFL VSLAASDLAV AIFVMPLHVV TFLAGGKWLL 120
  121 GVTVCQFFTT ADILLCTSSI LNLCAIALDR YWAIHNPINY AQKRTTKFVC IVIVISLQSN 180
  181 YGEGKRRRLP SFVMEM

Type	Start	End	Confidence
Cytoplasmic	1	16	0.70
Transmembrane Helix	17	35	0.66
Non-Cytoplasmic	36	54	0.84
Transmembrane Helix	55	77	0.92
Cytoplasmic	78	87	0.81
Transmembrane Helix	88	110	0.89
Non-Cytoplasmic	111	127	0.69
Transmembrane Helix	128	148	0.82
Cytoplasmic	149	196	0.74