YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE36973
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	24	0.98
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	241	0.99
Transmembrane Helix	242	263	0.94
Cytoplasmic	264	288	0.87
Transmembrane Helix	289	310	0.91
Non-Cytoplasmic	311	328	0.93
Transmembrane Helix	329	349	0.93
Cytoplasmic	350	362	0.87
Transmembrane Helix	363	384	0.93
Non-Cytoplasmic	385	401	0.83
Transmembrane Helix	402	422	0.92
Cytoplasmic	423	469	0.96
Transmembrane Helix	470	493	0.92
Non-Cytoplasmic	494	498	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSICPLRNCL FLFIFLLSYQ QASSFSFEQC NVTRSCWFHP PECAADNLAA CQSGVEWQML  60
   61 PEGLFLQLEA KVHDLDQTRP FYAALGFSFN QRMDDDTVFE CVVPHTGDGK VQISFNDETF 120
  121 NQVLPQGSSV LLTEGTTSYV DGVLTCSAKL LLDNRPLIDN DTQFMVHDLE SGSYHLLFAR 180
  181 GSANKYTLEK DIHSTNDGQQ FPWMSDEQVS FCRTNCSSPN LYHIGEMRQT YNVSRYWRYR 240
  241 IAVWHGILLM FAWWVLASNA ILISRYFKPL FPRNKLLGTA VWFQLHRDMM ILSVVIQVIC 300
  301 VLFIFYQAGW VWYQCSYMCT SDDFSKKMHG ITGFTATVLA LLQPVFGFLR PSPTSSIRPI 360
  361 FNWGHWLVGM FSWSVASATI VLALPMGKTG LNRLYGHVPN WIVLGYILFF IACNLILEII 420
  421 TITSNKTKIE GIQPHRFTVG PMGMALANLN TPIKDAPIEV PKRTKARVTV VLVHLIVSLS 480
  481 VNIAFAVMLF HALWSHSP