YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	egl-47
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYPFNRTTSI HAESASQHID ELDDDDFGRS NGKFYSNRHS QMDSDVVAHQ VPPGSPVEKT  60
   61 ILASILEMST INDMWVKTFT APGANKKDKK RRESLFECSW RGVHCVSNSL RSILFLFRLL 120
  121 AIFPATTDRK SRRKRNHRSI IKLILYVNYI VLAVLLNSFL IKMNFKVLML YKHKFGLMHT 180
  181 GTVASMITAT KPVINVFVIV LSAIKFKSHQ RLLKTIDMVD VCFRSAFGVS PPLRIYKFVF 240
  241 FFTLLIIFFS ALILKVVEFV GTGEIFGEHI LTDCSFILVP VLSLWNIIPL LYYHLYNILV 300
  301 RFYCRTLIKS MNREHKKRHF SLKFYYEQFT RITNVQEAVG DVFNPLLLFS LAWSLLVLCL 360
  361 TLYFLSEPTS TLLVPITPEQ VTNPKIREKL NITVHVKICW AAYQVVMAIL HIIIICSTGM 420
  421 MTNETTRQIV NAVLRIVPDA NADLDRFQIS CFVHKMTTQF MWGMTVWRAF PLERTTFFTL 480
  481 ISVIVTYSLL LFRFKDDMVQ NPPYMAAMAV FNTSAVPTPA PG

Type	Start	End	Confidence
Cytoplasmic	1	138	0.87
Transmembrane Helix	139	161	0.91
Non-Cytoplasmic	162	181	0.89
Transmembrane Helix	182	204	0.86
Cytoplasmic	205	234	0.90
Transmembrane Helix	235	257	0.88
Non-Cytoplasmic	258	275	0.77
Transmembrane Helix	276	296	0.80
Cytoplasmic	297	345	0.82
Transmembrane Helix	346	365	0.88
Non-Cytoplasmic	366	399	0.78
Transmembrane Helix	400	421	0.85
Cytoplasmic	422	469	0.73
Transmembrane Helix	470	494	0.74
Non-Cytoplasmic	495	522	0.55