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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: AT1A2_CHICK
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.63
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDGREYSPAA TTSENGGGRR KQKEKELDEL KKEVNLDDHK LSLDELGRKY QVDLSRGLSN  60
   61 ARAAEVLAQD GPNALTPPPT TPEWVKFCRQ LFGGFSILLW IGAILCFLAY GIQAAMEDEP 120
  121 SNDNLYLGVV LAAVVIVTGC FSYYQEAKSS KIMDSFKNMV PQQALVIREG EKIQINAENV 180
  181 VVGDLVEVKG GDRVPADMRI ISSHGCKVDN SSLTGESEPQ TRSPEFTHEN PLETRNICFF 240
  241 STNCVEGTAR GIVISTGDRT VMGRIASLAS GLEVGRTPIA MEIEHFIRLI TGVAVFLGLS 300
  301 FFILSLILGY TWLEAVIFLI GIIVANVPEG LLATVTVCLT LTAKRMARKN CLVKNLEAVE 360
  361 TLGSTSTICS DKTGTLTQNR MTVAHMWFDN QIHEADTTED QSGATFDKRS PTWAALSRIA 420
  421 GLCNRAVFKP GQENISISKR DTAGDASESA LLKCIQLSCG SVKKMRDKNP KVTEIPFNST 480
  481 NKYQLSIHER EEDPQGHILV MKGAPERILE RCSRILLQGQ EVPLDEEMKE AFQNAYLELG 540
  541 GLGERVLGFC HLYLPPDKFP RGFRFDADEV NFPTSDLCFV GLMSMIDPPR AAVPDAVGKC 600
  601 RSAGIKVIMV TGDHPITAKA IAKGVGIISE GNETVEDIAA RLNIPVSQVN PREAKACVVH 660
  661 GSDLKDMTAE QLDEILRNHT EIVFARTSPQ QKLIIVEGCQ RQGAIVAVTG DGVNDSPALK 720
  721 KADIGIAMGI AGSDVSKQAA DMILLDDNFA SIVTGVEEGR LIFDNLKKSI AYTLTSNIPE 780
  781 ITPFLLFIIA NIPLPLGTVT ILCIDLGTDM VPAISLAYEA AESDIMKRQP RNPRTDKLVN 840
  841 ERLISMAYGQ IGMIQALGGF FTYFVILAEN GFLPARLLGV RLAWDDRSTN DLEDSYGQEW 900
  901 TYEQRKVVEF TCHTAFFASI VVVQWADLII CKTRRNSVFQ QGMKNKILIF GLLEETALAA 960
  961 FLSYCPGMGV ALRMYPLKVT WWFCAFPYSL LIFAYDEVRK LILRRYPGGW VEKETYY

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle