YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ALGI_AZOVI
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.84
Transmembrane Helix	7	25	0.92
Non-Cytoplasmic	26	41	0.85
Transmembrane Helix	42	63	0.89
Cytoplasmic	64	77	0.78
Transmembrane Helix	78	96	0.93
Non-Cytoplasmic	97	114	0.81
Transmembrane Helix	115	138	0.80
Cytoplasmic	139	149	0.82
Transmembrane Helix	150	170	0.79
Non-Cytoplasmic	171	238	0.81
Transmembrane Helix	239	261	0.74
Cytoplasmic	262	280	0.68
Transmembrane Helix	281	298	0.55
Non-Cytoplasmic	299	317	0.67
Transmembrane Helix	318	338	0.85
Cytoplasmic	339	355	0.80
Transmembrane Helix	356	375	0.91
Non-Cytoplasmic	376	403	0.70
Transmembrane Helix	404	424	0.89
Cytoplasmic	425	467	0.70
Transmembrane Helix	468	488	0.80
Non-Cytoplasmic	489	499	0.56

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVFSSNVFLF LFLPLFLGLY YLSPARYRNL LLLTASYVFY AWWRIDFLGL FAAVTVFNYW  60
   61 IGLRIGAAGV RTQSAQRWLT LGVVVDLCVL GYFKYANFGV DSLNAIITSF GVEPFVVTHI 120
  121 LLPIGISFYV FESISYIIDV YRGDTPATRN LVDFAAFVAI FPHLIAGPVL RFRDLVDQFN 180
  181 HRTHTLDKFA EGCTRFMQGF IKKVFIADSL APIADHCFAL SDPTTGDAWL GALAYTAQLY 240
  241 FDFSGYSDMA IGLGLMIGFR FMENFNQPYI SQSITEFWRR WHISLSTWLR DYLYISLGGN 300
  301 RGTTFQTYRN LILTMLLGGL WHGANWTFII WGAWHGTWLA IERALRIDAA PKTIRPLRWV 360
  361 FAFLLVMVGW VIFRAENLDV AWRMYAAMFS FGDWTLSDLN KAQLTSLQIA TLLLAYVVIA 420
  421 VYGIRQFYAQ PLTGAPKAKA NDQADAPQGI VHASSGTLAY SQAIDIPALA TRVAVLLLFA 480
  481 ASVLKLSAQS FSPFLYFQF