YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|204322486, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.89
Transmembrane Helix	8	27	0.97
Cytoplasmic	28	41	0.89
Transmembrane Helix	42	64	0.89
Non-Cytoplasmic	65	83	0.92
Transmembrane Helix	84	106	0.84
Cytoplasmic	107	113	0.90
Transmembrane Helix	114	136	0.92
Non-Cytoplasmic	137	141	0.83
Transmembrane Helix	142	161	0.94
Cytoplasmic	162	198	0.96
Transmembrane Helix	199	220	0.88
Non-Cytoplasmic	221	233	0.67
Transmembrane Helix	234	253	0.89
Cytoplasmic	254	262	0.85
Transmembrane Helix	263	283	0.92
Non-Cytoplasmic	284	289	0.81
Transmembrane Helix	290	311	0.96
Cytoplasmic	312	322	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTVGTPLLW GGFAVVVVIM LSIDLLLQGR RGAHAMSMKQ AAGWSILWVT LSLLFNAAFW  60
   61 WYLAETQGRE VADPQALAFL TGYLIEKSLA VDNVFVWLML FSYFSVPPAL QRRVLVYGVL 120
  121 GAIVLRTIMI FAGTWLITQF EWLLYVFGAF LLFTGVKMAL AKEDESGIGE KPMVRWLRGH 180
  181 LRMTDTIENE HFFVRKNGLL YATPLLLVLI MVEFSDVIFA VDSIPAIFAV TTDPFIVLTS 240
  241 NLFAILGLRA MYFLLSGVAE RFSMLKYGLA VILVFIGIKM LIVDFYHIPI AISLGVVFGI 300
  301 LTITLVINAW VNHQRDKKLR AQ