YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	APH1B_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVAVFFGCT FIAFGPAIAL FMFTIARDPL RVIFLIAGAF FWLVSLLLSS LVWFITVQIS  60
   61 NKNSATQQRG LLIFGVVLSV LLQEAFRYGY YRLLKKANEG LLALSQEDTM PISMRQLAYV 120
  121 SGLGFGFMSG AFSVVNILSD SLGPGTVGIH GESQHYFISS AFMTLAIILL HMFWGVVFFE 180
  181 ACERQRWWAL GAVVASHLVV SCLTFVNPHY QGSLIPTYII LSVMAVWAYL CAGGSLRNLK 240
  241 LCLTCKDKDF LLANHRPR

Type	Start	End	Confidence
Non-Cytoplasmic	1	3	0.91
Transmembrane Helix	4	25	0.91
Cytoplasmic	26	32	0.79
Transmembrane Helix	33	55	0.94
Non-Cytoplasmic	56	69	0.75
Transmembrane Helix	70	91	0.81
Cytoplasmic	92	116	0.96
Transmembrane Helix	117	138	0.91
Non-Cytoplasmic	139	155	0.91
Transmembrane Helix	156	178	0.92
Cytoplasmic	179	186	0.90
Transmembrane Helix	187	207	0.95
Non-Cytoplasmic	208	213	0.83
Transmembrane Helix	214	233	0.91
Cytoplasmic	234	258	0.90