YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24347002, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQKMAAEFL GTLWLVLGGC GSAVLAAAFP EVGIGLLGVS LAFGLTVLTM AFAIGHISGC  60
   61 HLNPAVSFGL WAGGRFPTSE LLPYIIAQVA GGIAGAGVLY LIASGQEGFS LAAGFASNGF 120
  121 GEHSPGGYSM ISVMICEIVM TLFFLLVILG STDERAPKGF APIAIGLCLT LIHLISIPIS 180
  181 NTSVNPARST GPALFVGDWA VSQLWLFWAA PIIGAILAGV IYRYFNAAK

Type	Start	End	Confidence
Cytoplasmic	1	9	0.91
Transmembrane Helix	10	29	0.95
Non-Cytoplasmic	30	38	0.68
Transmembrane Helix	39	60	0.84
Cytoplasmic	61	80	0.79
Transmembrane Helix	81	103	0.93
Non-Cytoplasmic	104	126	0.92
Transmembrane Helix	127	149	0.93
Cytoplasmic	150	158	0.86
Transmembrane Helix	159	179	0.92
Non-Cytoplasmic	180	203	0.91
Transmembrane Helix	204	225	0.94
Cytoplasmic	226	229	0.89