YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ARE2_SACU7
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	224	0.87
Transmembrane Helix	225	247	0.84
Cytoplasmic	248	263	0.81
Transmembrane Helix	264	286	0.84
Non-Cytoplasmic	287	299	0.71
Transmembrane Helix	300	319	0.94
Cytoplasmic	320	327	0.79
Transmembrane Helix	328	348	0.87
Non-Cytoplasmic	349	411	0.86
Transmembrane Helix	412	430	0.70
Cytoplasmic	431	441	0.70
Transmembrane Helix	442	464	0.83
Non-Cytoplasmic	465	489	0.72
Transmembrane Helix	490	512	0.81
Cytoplasmic	513	574	0.74
Transmembrane Helix	575	595	0.78
Non-Cytoplasmic	596	599	0.61
Transmembrane Helix	600	618	0.73
Cytoplasmic	619	626	0.63
Transmembrane Helix	627	649	0.89
Non-Cytoplasmic	650	650	0.77

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKNKDLLEN EQFLRIQKLN ASDAGKRQSI LVDNEDELYG LTSSNNSCAS EHEGEGEGED  60
   61 ERPATTSSAP TQNHSAGDVA FIPGKTAEED TETVTKVVES DDQVFRTHVQ TLSSKGKSRY 120
  121 RKGSSNFISF FDDMAFENRP SILDGSVNDP FKTKFVGPTL EKEIRKREKE LMAMRKNLHH 180
  181 GKPAPDADAA DAPALTTTTT TTTSATSPET VVTIETTILS SNFSGLYVAF WMAIAFGAVK 240
  241 ALIDYYYQHN GSFKDSEILK FMTTNLSTVA LIDLIMYLST FFVVGIQYLC KWGVLNWSST 300
  301 GWAFTSIYEL LFVGFYMYLT ENILKLHWLS KIFLFLHSLV LLMKMHSFAF YNGYLWGIKQ 360
  361 ELQFSKSALA KYKDSVNDPD VVDALEKSCE FCSFELNSQS LNDQTQKFPN NINVSNFFMF 420
  421 TMFPTLIYQI EYPRTKEIRW VYVLEKICAI FGTIFLMMID AQILMHPVAM RALDVRNSEW 480
  481 TGILDRLLKW AGLLVDIVPG FIVMYILDFY LIWDAILNCV AELTRFGDRY FYGDWWNCVS 540
  541 WADFSRIWNI PVHKFLLRHV YHSSMSSFKL NKSQATLMTF FLSSVVHELA MYVIFKRLRF 600
  601 YLFFFQMLQV PLVALTNTKY MKDRTVIGNV IFWLGICMGP SVMCTLYLTF