YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ATOD_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.74
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTKLMTLQD ATGFFRDGMT IMVGGFMGIG TPSRLVEALL ESGVRDLTLI ANDTAFVDTG  60
   61 IGPLIVNGRV RKVIASHIGT NPETGRRMIS GEMDVVLVPQ GTLIEQIRCG GAGLGGFLTP 120
  121 TGVGTVVEEG KQTLTLDGKT WLLERPLRAD LALIRAHRCD TLGNLTYQLS ARNFNPLIAL 180
  181 AADITLVEPD ELVETGELQP DHIVTPGAVI DHIIVSQESK

Type	Start	End	Confidence
Cytoplasmic	1	12	0.66
Transmembrane Helix	13	32	0.67
Non-Cytoplasmic	33	220	0.90