YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|99215
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPIALQAGF DLLNDGRPET LWLGIGTLLM LIGTFYFIAR GWGVTDKEAR EYYAITILVP  60
   61 GIASAAYLAM FFGIGVTEVE LASGTVLDIY YARYADWLFT TPLLLLDLAL LAKVDRVTIG 120
  121 TLIGVDALMI VTGLIGALSK TPLARYTWWL FSTIAFLFVL YYLLTSLRSA AAKRSEEVRS 180
  181 TFNTLTALVA VLWTAYPILW IVGTEGAGVV GLGIETLAFM VLDVTAKVGF GFVLLRSRAI 240
  241 LGETEAPEPS AGADASAAD

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.94
Transmembrane Helix	21	42	0.92
Cytoplasmic	43	51	0.89
Transmembrane Helix	52	74	0.91
Non-Cytoplasmic	75	91	0.85
Transmembrane Helix	92	111	0.89
Cytoplasmic	112	118	0.79
Transmembrane Helix	119	138	0.95
Non-Cytoplasmic	139	145	0.81
Transmembrane Helix	146	165	0.94
Cytoplasmic	166	180	0.87
Transmembrane Helix	181	202	0.90
Non-Cytoplasmic	203	210	0.74
Transmembrane Helix	211	231	0.86
Cytoplasmic	232	259	0.90