YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	BACR3_HALSD
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPIALQAGY DLLGDGRPET LWLGIGTLLM LIGTFYFLVR GWGVTDKDAR EYYAVTILVP  60
   61 GIASAAYLSM FFGIGLTEVT VGGEMLDIYY ARYADWLFTT PLLLLDLALL AKVDRVTIGT 120
  121 LVGVDALMIV TGLIGALSHT AIARYSWWLF STICMIVVLY FLATSLRSAA KERGPEVAST 180
  181 FNTLTALVLV LWTAYPILWI IGTEGAGVVG LGIETLLFMV LDVTAKVGFG FILLRSRAIL 240
  241 GDTEAPEPSA GADVSAAD

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.95
Transmembrane Helix	21	42	0.92
Cytoplasmic	43	51	0.90
Transmembrane Helix	52	74	0.91
Non-Cytoplasmic	75	91	0.83
Transmembrane Helix	92	110	0.92
Cytoplasmic	111	117	0.80
Transmembrane Helix	118	139	0.90
Non-Cytoplasmic	140	146	0.69
Transmembrane Helix	147	166	0.93
Cytoplasmic	167	179	0.81
Transmembrane Helix	180	201	0.90
Non-Cytoplasmic	202	209	0.72
Transmembrane Helix	210	230	0.87
Cytoplasmic	231	258	0.92