YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	pssy-2
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.59
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	26	0.58
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	141	0.93
Transmembrane Helix	142	160	0.91
Cytoplasmic	161	170	0.86
Transmembrane Helix	171	191	0.93
Non-Cytoplasmic	192	200	0.77
Transmembrane Helix	201	222	0.94
Cytoplasmic	223	282	0.90
Transmembrane Helix	283	305	0.80
Non-Cytoplasmic	306	317	0.83
Transmembrane Helix	318	340	0.87
Cytoplasmic	341	391	0.92
Transmembrane Helix	392	411	0.90
Non-Cytoplasmic	412	422	0.74
Transmembrane Helix	423	444	0.93
Cytoplasmic	445	458	0.81
Transmembrane Helix	459	481	0.91
Non-Cytoplasmic	482	487	0.85
Transmembrane Helix	488	510	0.92
Cytoplasmic	511	557	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKPFKTEKG LLYLKLCIFA SFSAHSDFKY IYNFYNLFSE FLDSLSIFTR FFALQMSDSD  60
   61 DSDYSQIEHP RISSRSRSPP VSGQEQNLED EGFTTECDNN PDSVDRKFAG LLDRMELEKK 120
  121 HYDMINERIV DDVTMDQFYK PHSITVLVLV IALLIYKATF GKAENSTEKN YYDGFLGAGA 180
  181 LFLLISALTF PNGPFIRPHP ILWRVIFGLS VIYVIVLQFA LFQSFDDLKK ILTWLDSEGL 240
  241 GQKSLEEKEY ASECWNLSPA KIWSHVDFFA FAHFTGWIMK TLLLRHWVLC WFLSIIWEFT 300
  301 ELMFIDLLPN FAECWWDSLI LDVLLCNGVG IYVGMKLCNF LQMRQFHWES IRNIKSRRGK 360
  361 MKRFALQFTP ASWSGYDWYN SKSKANALRR TCLLSFLVFF WLLAELNTFF IKHVFAIDTK 420
  421 HPVVFWRIIL IAVIAAPTIR QFYVFSTDPL TRRVGMQSWV FVVICVLELA ICVKCGGIMF 480
  481 AKTSGWNMLL WAMSIIIGTI SCILASTWYA EHFGTTARVL VKGRRRLCYL ESSHENLGML 540
  541 QDDVIKKREE YLTPKRS