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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: CO1A2_CANLF
Protein type: Globular with Signal Peptide
Type Confidence: 0.99
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSFVDTRTL LLLAVTSCLA TCQSLQEATA RKGPTGDRGP RGERGPPGPP GRDGDDGIPG  60
   61 PPGPPGPPGP PGLGGNFAAQ YDGKGVGLGP GPMGLMGPRG PPGASGAPGP QGFQGPAGEP 120
  121 GEPGQTGPAG ARGPPGPPGK AGEDGHPGKP GRPGERGVVG PQGARGFPGT PGLPGFKGIR 180
  181 GHNGLDGLKG QPGAPGVKGE PGAPGENGTP GQTGARGLPG ERGRVGAPGP AGARGSDGSV 240
  241 GPVGPAGPIG SAGPPGFPGA PGPKGEIGPV GNPGPAGPAG PRGEVGLPGV SGPVGPPGNP 300
  301 GANGLTGAKG AAGLPGVAGA PGLPGPRGIP GPVGAAGATG ARGIVGEPGP AGSKGESGNK 360
  361 GEPGSAGAQG PPGPSGEEGK RGPNGEAGSA GPSGPPGLRG SPGSRGLPGA DGPAGVMGPP 420
  421 GPRGATGPAG VRGPNGDSGR PGEPGLMGPR GFPGAPGNVG PAGKEGPMGL PGIDGRPGPI 480
  481 GPAGARGEPG NIGFPGPKGP TGDPGKNGDK GHAGLAGARG APGPDGNNGA QGPPGPQGVQ 540
  541 GGKGEQGPAG PPGFQGLPGP AGTAGEVGKP GERGLPGEFG LPGPAGPRGE RGPPGESGAA 600
  601 GPSGPIGSRG PSGPPGPDGN KGEPGVLGAP GTAGASGPGG LPGERGAAGI PGGKGEKGET 660
  661 GLRGEIGNPG RDGARGAPGA MGAPGPAGAT GDRGEAGPAG PAGPAGPRGT PGERGEVGPA 720
  721 GPNGFAGPAG AAGQPGAKGE RGTKGPKGEN GPVGPTGPIG SAGPSGPNGP PGPAGSRGDG 780
  781 GPPGATGFPG AAGRTGPPGP SGITGPPGPP GAAGKEGLRG PRGDQGPVGR TGETGASGPP 840
  841 GFTGEKGPSG EPGTAGPPGT PGPQGLLGAP GILGLPGSRG ERGLPGVAGS VGEPGPLGIA 900
  901 GPPGARGPPG AVGAPGVNGA PGEAGRDGNP GNDGPPGRDG QAGHKGERGY PGNIGPVGAV 960
  961 GAPGPHGPVG PTGKHGNRGE PGPAGSVGPV GAVGPRGPSG PQGIRGDKGE PGEKGPRGLP1020
 1021 GLKGHNGLQG LPGLAGQHGD QGAPGSVGPA GPRGPAGPSG PAGKDGRTGQ PGTVGPAGIR1080
 1081 GSQGSQGPAG PPGPPGPPGP PGPSGGGYDF GYEGDFYRAD QPRSPPSLRP KDYEVDATLK1140
 1141 SLNNQIETLL TPEGSRKNPA RTCRDLRLSH PEWSSGYYWI DPNQGCTMDA IKVYCDFSTG1200
 1201 ETCIRAQPEN IPAKNWYRNS KVKKHIWLGE TINGGTQFEY NVEGVTTKEM ATQLAFMRLL1260
 1261 ANHASQNITY HCKNSIAYMD EETGNLKKAV ILQGSNDVEL VAEGNSRFTY TVLVDGCSKK1320
 1321 TNEWRKTIIE YKTNKPSRLP ILDIAPLDIG DADQEFRVDV GPVCFK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle