YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CAC1B_RABIT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	95	0.94
Transmembrane Helix	96	116	0.79
Non-Cytoplasmic	117	135	0.78
Transmembrane Helix	136	156	0.90
Cytoplasmic	157	165	0.68
Transmembrane Helix	166	184	0.85
Non-Cytoplasmic	185	222	0.71
Transmembrane Helix	223	245	0.87
Cytoplasmic	246	293	0.84
Transmembrane Helix	294	313	0.76
Non-Cytoplasmic	314	333	0.85
Transmembrane Helix	334	355	0.94
Cytoplasmic	356	483	0.98
Transmembrane Helix	484	505	0.94
Non-Cytoplasmic	506	512	0.86
Transmembrane Helix	513	532	0.90
Cytoplasmic	533	546	0.74
Transmembrane Helix	547	567	0.81
Non-Cytoplasmic	568	609	0.56
Transmembrane Helix	610	633	0.88
Cytoplasmic	634	643	0.51
Transmembrane Helix	644	663	0.51
Non-Cytoplasmic	664	684	0.52
Transmembrane Helix	685	710	0.79
Cytoplasmic	711	1151	0.56
Transmembrane Helix	1152	1174	0.82
Non-Cytoplasmic	1175	1222	0.40
Transmembrane Helix	1223	1244	0.87
Cytoplasmic	1245	1286	0.56
Transmembrane Helix	1287	1309	0.85
Non-Cytoplasmic	1310	1355	0.56
Transmembrane Helix	1356	1376	0.56
Cytoplasmic	1377	1399	0.89
Transmembrane Helix	1400	1422	0.95
Non-Cytoplasmic	1423	1479	0.91
Transmembrane Helix	1480	1498	0.92
Cytoplasmic	1499	1509	0.84
Transmembrane Helix	1510	1530	0.92
Non-Cytoplasmic	1531	1549	0.74
Transmembrane Helix	1550	1570	0.79
Cytoplasmic	1571	1598	0.70
Transmembrane Helix	1599	1620	0.86
Non-Cytoplasmic	1621	1643	0.67
Transmembrane Helix	1644	1661	0.48
Cytoplasmic	1662	1685	0.66
Transmembrane Helix	1686	1711	0.87
Non-Cytoplasmic	1712	2339	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRFGDELGG RYGGAGGAER ARGGGAGGAG GPGPGGLPPG QRVLYKQSIA QRARTMALYN  60
   61 PIPVKQNCFT VNRSLFVFSE DNVVRKYAKR ITEWPPFEYM ILATIIANCI VLALEQHLPD 120
  121 GDKTPMSERL DDTEPYFIGI FCFEAGIKIL ALGFVLHKGS YLRNGWNVMD FVVVLTGILA 180
  181 TAGTDFDLRT LRAVRVLRPL KLVSGIPSLQ VVLKSIMKAM VPLLQIGLLL FFAILMFAII 240
  241 GLEFYMGKFH KACFPNSTDP DPVGDFPCGK EAPARLCEGD TECREYWAGP NFGITNFDNI 300
  301 LFAILTVFQC ITMEGWTDIL YNTNDAAGNT WNWLYFIPLI IIGSFFMLNL VLGVLSGEFA 360
  361 KERERVENRR AFLKLRRQQQ IERELNGYLE WIFKAEEVML AEEDRNAEEK SPLDAVLKRA 420
  421 AAKKSRSDLI QAEEGEGRLT GLCAPGSPFA RASLKSGKTE SSSYFRRKEK MFRFFIRRMV 480
  481 KAQSFYWTVL CVVALNTLCV AMVHYNQPQR LTTALYFAEF VFLGLFLTEM SLKMYGLGPR 540
  541 SYFRSSFNCF DFGVIVGSIF EVVWAAVKPG TSFGISVLRA LRLLRIFKVT KYWNSLRNLV 600
  601 VSLLNSMKSI ISLLFLLFLF IVVFALLGMQ LFGGQFNFKD ETPTTNFDTF PAAILTVFQI 660
  661 LTGEDWNAVM YHGIESQGGV SRGMFSSFYF IVLTLFGNYT LLNVFLAIAV DNLANAQELT 720
  721 KDEEEMEEAA NQKLALQKAK EVAEVSPMSA ANISIAARQQ NSAKARSVWE QRASQLRLQN 780
  781 LRASCEALYS EMDPEERLRY ATARHLRPDV KTHLDRPLVV EPGRDAPRGP PGGKSRPDGS 840
  841 EAPEGADPPR RHHRHRDKDK APATVPSAGE QDRAEALRAE GGELGPREER GRPRRSRSKE 900
  901 APGAPEVRSD RGRGPCPEGG RRHHRRGSPE EAAEREPRRH RAHRHGPDPG KEGPASGTRG 960
  961 ERRARHRTGP RACPREAESS EEPARRHRAR HKAPPTQETA EKDKEAAEKG GEATEAEKDK1020
 1021 EARNHQPKEL PCDLEAIGML GVGAVHTLPS TCLQKVEEQP EDADNQRNVT RMGSQPPDTS1080
 1081 TTVHIPVTLT GPPGETTVVP SGNVDLESQA EGKKEVETSD VMRSGPRPIV PYSSMFCLSP1140
 1141 TNLLRRCCHY IVTMRYFEMV ILVVIALSSI ALAAEDPVRT DSPRNNALKY MDYIFTGVFT1200
 1201 FEMVIKMIDL GLLLHPGAYF RDLWNILDFI VVSGALVAFA FSGSKGKDIS TIKSLRVLRV1260
 1261 LRPLKTIKRL PKLKAVFDCV VNSLKNVLNI LIVYMLFMFI FAVIAVQLFK GKFFYCTDES1320
 1321 KELERDCRGQ YLDYEKEEVE AQPRQWKKYD FHYDNVLWAL LTLFTVSTGE GWPMVLKHSV1380
 1381 DATYEEQGPS PGYRMELSIF YVVYFVVFPF FFVNIFVALI IITFQEQGDK VMSECSLEKN1440
 1441 ERACIDFAIS ARPLTRYMPQ NKQSFQYKTW TFVVSPPFEY FIMAMIALNT VVLMMKFYDA1500
 1501 PYEYELMLKC LNIVFTSMFS MECVLKIIAF GVLNYFRDAW NVFDFVTVLG SITDILVTEI1560
 1561 ANNFINLSFL RLFRAARLIK LLRQGYTIRI LLWTFVQSFK ALPYVCLLIA MLFFIYAIIG1620
 1621 MQVFGNIALD DDTSINRHNN FRTFLQALML LFRSATGEAW HEIMLSCLSS RACDEHSNAS1680
 1681 ECGSDFAYFY FVSFIFLCSF LMLNLFVAVI MDNFEYLTRD SSILGPHHLD EFIRVWAEYD1740
 1741 PAACGRISYS DMFEMLKHMS PPLGLGKKCP ARVAYKRLVR MNMPISSEDM TVHFTSTLMA1800
 1801 LIRTALDIKL APAGTKQHQC DAELRKEISC VWANLPQKTL DLLVPPHKPD EMTVGKVYAA1860
 1861 LMIFDFYKQN KTSRDQTQQA PGGLSQLGPV SLFHPLKATL EQTQPALRGA RAFLRQKSSA1920
 1921 SLSNGGAVQT QESGIKESVS WGTQRTQDVL CEARAPLERG HSAEIPVGQP GTLAVDVQMQ1980
 1981 NMTLSGPDAE PQPGLESQGR AASMPRLAAE TQPAPDASPM KRSISTLAPR PHTARLGSTA2040
 2041 LDRPAPSQAP HHHHHRCHRR RDRKQRSLEK GPSLSADTDG APDSTVGPGL PTGEGPPGCR2100
 2101 RERERRQERG RSQERRQPSS SSSEKHRFYS CDRFGGREPP QPKPSLSSHP TSPTAGQEPG2160
 2161 PHPQGSGSVH GSPLLSTSGA STPGRGRRQL PQTPLTPRPS VTYKTANSSP VHFAGAPSGL2220
 2221 PAFSPGRLSR GLSEHNALLQ RDPLSRPLAP GSRIGSDPYL GQRLDSEAPA RALPEDAPAF2280
 2281 EETAASNSGR SSRTSYVSSL TSQPPPLRRV PNGYHCTLGL GGGGRARRGC HHPDRDRRC