YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CLSA_SALPC
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTFYTVVSW LVILGYWVLI AGVTLRILMK RRAVPSAMAW LLIIYILPLV GIIAYLSVGE  60
   61 LHLGKRRAER ARAMWPSTAK WLNDLKACKH IFAQENSSVA SSLFKLCERR QGIAGVKGNQ 120
  121 LQLLTDSDDV MQALIRDIQL ARHNIEMVFY IWQPGGMADQ VAESLMAAAR RGIHCRLMLD 180
  181 SAGSVAFFRS PWAAMMRNAG IEVVEALKVN LMRVFLRRMD LRQHRKMVMI DNYIAYTGSM 240
  241 NMVDPRFFKQ DAGVGQWVDL MARMEGPVAT AMGIVYSCDW EIETGKRILP PPPDVNIMPF 300
  301 EQASGHTIHT IASGPGFPED LIHQALLTAT YAAREYLIMT TPYFVPSDDL LHAICTAAQR 360
  361 GVDVSIILPR KNDSLLVGWA SRAFFSELLA AGVKIYQFEG GLLHTKSVLV DGELSLVGTV 420
  421 NLDMRSLWLN FEITLVIDDT GFGADLAAVQ DDYISRSRLL DARLWVKRPL WQRITERLFY 480
  481 FFSPLL

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.88
Transmembrane Helix	7	28	0.94
Cytoplasmic	29	36	0.84
Transmembrane Helix	37	59	0.90
Non-Cytoplasmic	60	486	0.95