YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	COX5_NEUCR
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.23
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRTPTVSAL VRNVAVRAAK PTMAVRAAST MPISNPTLAN IEKRWEQMPM QEQAELWMAL  60
   61 RDRMKGNWAD LTLQEKKAAY YIAFGPHGPR ALPPPGEQKK VLAYTVAGVF LSFVIFATMR 120
  121 AFAKPPPATM TKEWQEATNE FLKAQKSDPL TGLTSEGYNG KGHVQSPSAS A

Type	Start	End	Confidence
Signal Peptide	1	18	0.41
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	100	0.65
Transmembrane Helix	101	123	0.69
Cytoplasmic	124	171	0.42