YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|156229610
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GEKAEKEVEV KPEPIPEEPK PQRATKAKKE KKSVKGAGFE LWNELDVQRN KFMNCLSRNF  60
   61 YNIRFLALFL AFALNFILLF YKVSDTPPSS DEFEGSGIFE GSGLFEGSAE DFEGSGGEDG 120
  121 GDDEDEEGPV YYFLEESTGY MQPTLSFLAI LHTVIAFISI IGYNCLKIPL VIFKREKELA 180
  181 RKLEFDGLYI TEQPADDDIK GQWDRLVLNT PSFPTNYWDK FVKRKVLDKY GDIYGRERIA 240
  241 ELLGMDLASL DVSKQQTDKK PEEPDNSMLA WFTSIDIKYQ IWKFGVVFTD NTFLYLVWYT 300
  301 VMSLLGHYNN FFFACHLLDI AMGVKTLRTI LSSVTHNGKQ LMMTVGLLAV VVYLYTVVAF 360
  361 NFFRKFYNKS EDEDEPDMKC DDMMT

Type	Start	End	Confidence
Cytoplasmic	1	59	0.99
Transmembrane Helix	60	81	0.92
Non-Cytoplasmic	82	147	0.96
Transmembrane Helix	148	166	0.95
Cytoplasmic	167	280	0.97
Transmembrane Helix	281	302	0.76
Non-Cytoplasmic	303	340	0.59
Transmembrane Helix	341	363	0.87
Cytoplasmic	364	385	0.64