YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CYNX_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	33	0.50
Transmembrane Helix	34	58	0.86
Cytoplasmic	59	66	0.72
Transmembrane Helix	67	85	0.78
Non-Cytoplasmic	86	89	0.77
Transmembrane Helix	90	113	0.86
Cytoplasmic	114	123	0.91
Transmembrane Helix	124	146	0.91
Non-Cytoplasmic	147	155	0.82
Transmembrane Helix	156	175	0.93
Cytoplasmic	176	197	0.93
Transmembrane Helix	198	221	0.85
Non-Cytoplasmic	222	231	0.77
Transmembrane Helix	232	253	0.89
Cytoplasmic	254	262	0.87
Transmembrane Helix	263	281	0.98
Non-Cytoplasmic	282	287	0.77
Transmembrane Helix	288	309	0.95
Cytoplasmic	310	320	0.76
Transmembrane Helix	321	339	0.94
Non-Cytoplasmic	340	353	0.80
Transmembrane Helix	354	374	0.93
Cytoplasmic	375	384	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLVLVLIGL NMRPLLTSVG PLLPQLRQAS GMSFSVAALL TALPVVTMGG LALAGSWLHQ  60
   61 HVSERRSVAI SLLLIAVGAL MRELYPQSAL LLSSALLGGV GIGIIQAVMP SVIKRRFQQR 120
  121 TPLVMGLWSA ALMGGGGLGA AITPWLVQHS ETWYQTLAWW ALPAVVALFA WWWQSAREVA 180
  181 SSHKTTTTPV RVVFTPRAWT LGVYFGLING GYASLIAWLP AFYIEIGASA QYSGSLLALM 240
  241 TLGQAAGALL MPAMARHQDR RKLLMLALVL QLVGFCGFIW LPMQLPVLWA MVCGLGLGGA 300
  301 FPLCLLLALD HSVQPAIAGK LVAFMQGIGF IIAGLAPWFS GVLRSISGNY LMDWAFHALC 360
  361 VVGLMIITLR FAPVRFPQLW VKEA