YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DADA_VIBVU
Protein type:	Globular with Signal Peptide
Type Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKAVVLGSGV VGLMSAWYLQ KAGYQVTVVD RQARSAEETS FANAGQISYG YSSPWAAPGI  60
   61 PQKALRWLME EHAPLKIKPS LDPQLLKWAT QMLANCQLSR YQVNKARMLA IANHSRECLS 120
  121 QLRQEHDIEY QGRQQGTLQV FRTQKQLIAI EKDIALLEQS GTRYQRMSVD ECIKQEPGLA 180
  181 AVSHKLTGGL YLPDDETGDC YLFCQQMTEL AQQQGVTFLF NTNVKKVNTQ GNQVVSVSTD 240
  241 AGELQADVYV VAMGSYSTAL LAKLGITIPV YPVKGYSLTV PITDESQAPV STVMDETYKV 300
  301 ALTRFDDRIR VAGTAELAGF DPAIPEKRKA TISMVVNDLF PHSGDFAKAE FWTGFRPMTP 360
  361 DGTPLIGKTP LKNLYTNTGH GTLGWTMACG SGHLLSQIIT GEQSENPAGL DLFRYAS

Type	Start	End	Confidence
Signal Peptide	1	16	0.70
N-region	1	7
H-region	8	13
C-region	14	16
Cleavage Site	16	17
Non-Cytoplasmic	17	417	0.99