YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DSBD_HAEIN
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	16	0.99
N-region	1	7
H-region	8	13
C-region	14	16
Cleavage Site	16	17
Non-Cytoplasmic	17	175	0.99
Transmembrane Helix	176	201	0.87
Cytoplasmic	202	219	0.83
Transmembrane Helix	220	244	0.88
Non-Cytoplasmic	245	253	0.81
Transmembrane Helix	254	276	0.92
Cytoplasmic	277	295	0.90
Transmembrane Helix	296	318	0.90
Non-Cytoplasmic	319	336	0.79
Transmembrane Helix	337	358	0.92
Cytoplasmic	359	370	0.88
Transmembrane Helix	371	392	0.87
Non-Cytoplasmic	393	398	0.79
Transmembrane Helix	399	415	0.92
Cytoplasmic	416	422	0.75
Transmembrane Helix	423	445	0.76
Non-Cytoplasmic	446	579	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKLFLFFTL IFTAFAANSG LFDKKQTFLK VDDAFAFSAT LSTDKSQLQA HWDIADGYYL  60
   61 YQDKISAELV GKSNPLSLHT QQAAELHQDP YFGEVKVFTH SIDGIFRGAF NNADDKVEIT 120
  121 YQGCTEGFCY PPETKVLRIG DLVVSQKQIV EKTVEKNTAL LSEQDRLADG LFHSKWAIFG 180
  181 FFVLGLGLAF TPCVLPMLPL LSAIVIGQQQ RPNMMRAFSL AFLYVQGMAL TYTLLGLAVA 240
  241 AIGLPFQIAL QHPYVMIGLS ILFVALALSM FGLFTIQLPN SLQNKLNTWS QKQTSGAFGG 300
  301 AFAMGMIAGL VASPCTSAPL SGALLYVAQS GDLFTGAVTL YLLALGMGVP LMLITLFGNK 360
  361 ILPKSGEWMN TVKQTFGFVM LALPVFLLSR ILPEVWEPRL WAGLATVFFI WFALQMSKNG 420
  421 FGYAIKIISF ALAMVTVQPL QNWIWQTQTT TQSAVENMPV SQVKFKQIKN TEELDRTLAE 480
  481 NPHSIAMLDL YADWCVACKE FEKLTFSDPQ VQQQFQNILL LQVSMTKNSP ENKALMERFN 540
  541 VMGLPTILFF DQQNNEIKGS RVTGFMDADA FSNWIEKLL