YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	lcl\|NC_016856.1_...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	19	0.99
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	169	0.99
Transmembrane Helix	170	193	0.91
Cytoplasmic	194	209	0.86
Transmembrane Helix	210	234	0.87
Non-Cytoplasmic	235	246	0.79
Transmembrane Helix	247	270	0.91
Cytoplasmic	271	290	0.90
Transmembrane Helix	291	315	0.90
Non-Cytoplasmic	316	330	0.80
Transmembrane Helix	331	351	0.92
Cytoplasmic	352	360	0.83
Transmembrane Helix	361	380	0.92
Non-Cytoplasmic	381	388	0.71
Transmembrane Helix	389	407	0.94
Cytoplasmic	408	417	0.70
Transmembrane Helix	418	434	0.75
Non-Cytoplasmic	435	567	0.75

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQRIFTLIL LLCSTSAFAG LFDAPGRSQF VPADRAFVFD FQQNQHDLTL SWQVKEGYYL  60
   61 YRKQISITPT KADIAAVQLP TGVWHEDEFY GKSEIYRKRL NVPVTVNQAA AGATLTVTYQ 120
  121 GCADAGFCYP PETKTVPLSE VAAAIDATPT PAVTQTSETS KPAAQLPFSA LWALLIGIGI 180
  181 AFTPCVLPMY PLISGIVLGG RQRLSTGRAL LLAFIYVQGM ALTYTALGLV VAAAGLQFQA 240
  241 ALQHPYVLIG LAIVFTLLAL SMFGLFTLQL PSSLQTRLTL MSNRQQGGSP GGVFVMGAIA 300
  301 GLICSPCTTA PLSAILLYIA QSGNMWLGGG TLYLYALGMG LPLMLVTVFG NRLLPKSGPW 360
  361 MAHVKTAFGF VILALPVFLL ERIIGEAWGL RLWSLLGVAF FGWAFITSLQ ARRAWMRIVQ 420
  421 IILLAAALIS VRPLQDWAFG SPSAQAPAHL NFTAISTVDE LNQALAQAKG KPVMLDFYAD 480
  481 WCVACKEFEK YTFSDPRVQQ ALGDTVLLQA NVTANNAQDV ALLKHLQVLG LPTILFFNTQ 540
  541 GQEQPQSRVT GFMDAATFSA HLHDRQP